PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_1D7D3D0DE.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 107aa    MW: 12110.8 Da    PI: 9.0999
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_1D7D3D0DE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.9e-161564148
                           TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd+ l + +++ Gg+  +W++ ++  g++R++k+c++rw +yl
  Traes_2AL_1D7D3D0DE.1 15 KGPWTEEEDKALMEHIQKRGGNvgSWRSLPKAAGLNRCGKSCRLRWTNYL 64
                           79**********************************************97 PP

2Myb_DNA-binding39.71.1e-1270107140
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 
                            rg++T +E+ l++ +++ lG++ W+tIa ++  gRt++++
  Traes_2AL_1D7D3D0DE.1  70 RGNFTDDEERLIITLHASLGNK-WSTIATHLE-GRTDNEI 107
                            89********************.*********.*****86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-23767IPR009057Homeodomain-like
PROSITE profilePS5129422.6251068IPR017930Myb domain
SuperFamilySSF466891.69E-2612107IPR009057Homeodomain-like
SMARTSM007177.9E-101466IPR001005SANT/Myb domain
PfamPF002493.5E-141564IPR001005SANT/Myb domain
CDDcd001671.93E-71764No hitNo description
Gene3DG3DSA:1.10.10.605.4E-1968107IPR009057Homeodomain-like
PROSITE profilePS5129416.40569107IPR017930Myb domain
SMARTSM007170.01869107IPR001005SANT/Myb domain
PfamPF002491.0E-1070107IPR001005SANT/Myb domain
CDDcd001675.12E-772107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MGRSPCCCRD AGVKKGPWTE EEDKALMEHI QKRGGNVGSW RSLPKAAGLN RCGKSCRLRW  60
TNYLRPDIKR GNFTDDEERL IITLHASLGN KWSTIATHLE GRTDNEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-231310725116MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1569041e-103AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene).
GenBankBT0543981e-103BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds.
GenBankHQ8586911e-103HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105856.13e-69transcription factor MYB2
SwissprotQ8GWP03e-49MYB39_ARATH; Transcription factor MYB39
TrEMBLW5AQ353e-75W5AQ35_WHEAT; Uncharacterized protein
STRINGSi012660m2e-68(Setaria italica)
STRINGGRMZM2G081557_P016e-68(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-54myb domain protein 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]